IRGSP/RAP build 5 data set

Annotation data on IRGSP build 5 genome sequence

Genome sequences

• The IRGSP genome sequence (build 5) masked by RepeatMasker with MIPS repeat data.
  [DOWNLOAD] (gz file, 117MB, MD5 checksum)
• Changes from build 4 to 5.
  [DOWNLOAD] (zip file, 14KB)
• Upstream sequences (1, 2 and 3 kbp) of all genes in FASTA format.
  [DOWNLOAD] (zip file, 74MB)
• Downstream sequences (1, 2 and 3 kbp) of all genes in FASTA format.
  [DOWNLOAD] (zip file, 73MB)

Gene set

• Gene structure and function information of rice genes in GFF format.

  All chromosomes in one file:	[DOWNLOAD] (gz file, 7MB)
  Each chromosome in each file:	[DOWNLOAD] (gz file, 7MB)

• Rice gene sequences in FASTA format.
  [DOWNLOAD] (gz file, 37MB)

rRNA/tRNA gene sets

• rRNA genes

  Gene coordinates in GFF format:	[DOWNLOAD] (gz file, 3KB)
  Sequences in FASTA format:	[DOWNLOAD] (gz file, 7KB)

• tRNA genes

  Gene coordinates in GFF format:	[DOWNLOAD] (gz file, 16KB)
  Sequences in FASTA format:	[DOWNLOAD] (gz file, 10KB)

Predicted gene set

• Gene structure information of computationally predicted genes in GFF format.

  All chromosomes in one file:	[DOWNLOAD] (gz file, 710KB)
  Each chromosome in each file:	[DOWNLOAD] (gz file, 700KB)

• Predicted gene sequences in FASTA format.
  [DOWNLOAD] (gz file, 3MB)

Miscs

• Table of RAP and MSU's LOC_Os IDs in tab-delimited format.
  [DOWNLOAD] (gz file, 250KB)