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IRGSP/RAP build 5 data set

Annotation data on IRGSP build 5 genome sequence

Genome sequences

  • The IRGSP genome sequence (build 5) masked by RepeatMasker with MIPS repeat data.
    [DOWNLOAD] (gz file, 117MB, MD5 checksum)
  • Changes from build 4 to 5.
    [DOWNLOAD] (zip file, 14KB)
  • Upstream sequences (1, 2 and 3 kbp) of all genes in FASTA format.
    [DOWNLOAD] (zip file, 74MB)
  • Downstream sequences (1, 2 and 3 kbp) of all genes in FASTA format.
    [DOWNLOAD] (zip file, 73MB)

Gene set

  • Gene structure and function information of rice genes in GFF format.
    All chromosomes in one file:[DOWNLOAD] (gz file, 7MB)
    Each chromosome in each file:[DOWNLOAD] (gz file, 7MB)
  • Rice gene sequences in FASTA format.
    [DOWNLOAD] (gz file, 37MB)

rRNA/tRNA gene sets

  • rRNA genes
    Gene coordinates in GFF format:[DOWNLOAD] (gz file, 3KB)
    Sequences in FASTA format:[DOWNLOAD] (gz file, 7KB)
  • tRNA genes
    Gene coordinates in GFF format:[DOWNLOAD] (gz file, 16KB)
    Sequences in FASTA format:[DOWNLOAD] (gz file, 10KB)

Predicted gene set

  • Gene structure information of computationally predicted genes in GFF format.
    All chromosomes in one file:[DOWNLOAD] (gz file, 710KB)
    Each chromosome in each file:[DOWNLOAD] (gz file, 700KB)
  • Predicted gene sequences in FASTA format.
    [DOWNLOAD] (gz file, 3MB)

Miscs

  • Table of RAP and MSU's LOC_Os IDs in tab-delimited format.
    [DOWNLOAD] (gz file, 250KB)